Package: boa 1.1.8-2

boa: Bayesian Output Analysis Program (BOA) for MCMC

A menu-driven program and library of functions for carrying out convergence diagnostics and statistical and graphical analysis of Markov chain Monte Carlo sampling output.

Authors:Brian J. Smith [aut, cre]

boa_1.1.8-2.tar.gz
boa_1.1.8-2.zip(r-4.5)boa_1.1.8-2.zip(r-4.4)boa_1.1.8-2.zip(r-4.3)
boa_1.1.8-2.tgz(r-4.4-any)boa_1.1.8-2.tgz(r-4.3-any)
boa_1.1.8-2.tar.gz(r-4.5-noble)boa_1.1.8-2.tar.gz(r-4.4-noble)
boa_1.1.8-2.tgz(r-4.4-emscripten)boa_1.1.8-2.tgz(r-4.3-emscripten)
boa.pdf |boa.html✨
boa/json (API)

# Install 'boa' in R:
install.packages('boa', repos = c('https://brian-j-smith.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/brian-j-smith/boa/issues

Datasets:
  • line1 - BUGS Line Example
  • line2 - BUGS Line Example

On CRAN:

46 exports 1 stars 3.34 score 0 dependencies 20 mentions 37 scripts 395 downloads

Last updated 8 years agofrom:32a9a86640. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 05 2024
R-4.5-winNOTESep 05 2024
R-4.5-linuxNOTESep 05 2024
R-4.4-winNOTESep 05 2024
R-4.4-macNOTESep 05 2024
R-4.3-winOKSep 05 2024
R-4.3-macOKSep 05 2024

Exports:boa.acfboa.chainboa.chain.addboa.chain.collapseboa.chain.delboa.chain.evalboa.chain.gandrboa.chain.importboa.chain.infoboa.chain.resetboa.chain.subsetboa.chain.supportboa.gewekeboa.handwboa.hpdboa.importASCIIboa.importBUGSboa.importMatrixboa.initboa.loadboa.menuboa.parboa.plotboa.plot.acfboa.plot.bandgboa.plot.densityboa.plot.gandrboa.plot.gewekeboa.plot.historyboa.plot.parboa.plot.titleboa.plot.traceboa.print.acfboa.print.corboa.print.gandrboa.print.gewekeboa.print.handwboa.print.hpdboa.print.infoboa.print.parboa.print.randlboa.print.statsboa.quitboa.randlboa.saveboa.stats

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
Autocorrelation Functionboa.acf
Session Lists of MCMC Sequencesboa.chain
Add MCMC Sequenceboa.chain.add
Concatenate MCMC Sequencesboa.chain.collapse
Delete MCMC Sequencesboa.chain.del
Formulate New Parameterboa.chain.eval
Gelman and Rubin Convergence Diagnosticsboa.chain.gandr
Import MCMC Sequenceboa.chain.import
Information about MCMC Sequencesboa.chain.info
Reset MCMC Sequencesboa.chain.reset
Subset MCMC Sequencesboa.chain.subset
Set Support for Parametersboa.chain.support
Geweke Convergence Diagnosticsboa.geweke
Heidelberger and Welch Convergence Diagnosticsboa.handw
Highest Probability Density Intervalboa.hpd
Import ASCII Databoa.importASCII
Import BUGS Databoa.importBUGS
Import ASCII Databoa.importMatrix
Start Sessionboa.init
Load Sessionboa.load
Interactive BOA Menuboa.menu
Global Parametersboa.par
Plot Parameters in MCMC Sequencesboa.plot
Plot Autocorrelation Functionboa.plot.acf
Plot Brooks and Gelman Multivariate Shrink Factorsboa.plot.bandg
Plot Density Functionsboa.plot.density
Plot Gelman and Rubin Shrink Factorsboa.plot.gandr
Plot Geweke Convergence Diagnosticsboa.plot.geweke
Plot Parameter Estimation Historiesboa.plot.history
Set Plotting Parametersboa.plot.par
Add Plot Titleboa.plot.title
Plot Trace Historiesboa.plot.trace
Print Autocorrelation Functionsboa.print.acf
Print Correlation Matricesboa.print.cor
Print Gelman and Rubin Convergence Diagnosticsboa.print.gandr
Print Geweke Convergence Diagnosticsboa.print.geweke
Print Heidelberger and Welch Convergence Diagnosticsboa.print.handw
Print Highest Probability Density Intervalsboa.print.hpd
Print Information about MCMC Sequencesboa.print.info
Print Global Parameters' Descriptions and Current Valuesboa.print.par
Print Raftery and Lewis Convergence Diagnosticsboa.print.randl
Print Summary Statisticsboa.print.stats
Quit Sessionboa.quit
Raftery and Lewis Convergence Diagnosticsboa.randl
Save Sessionboa.save
Summary Statisticsboa.stats
BUGS Line Exampleline line1 line2