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  "Authors@R": "person(c(\"Brian\", \"J\"), \"Smith\",\nemail = \"brian-j-smith@uiowa.edu\",\nrole = c(\"aut\", \"cre\"))",
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  "Description": "Meta-package for statistical and machine learning with a\nunified interface for model fitting, prediction, performance\nassessment, and presentation of results.  Approaches for model\nfitting and prediction of numerical, categorical, or censored\ntime-to-event outcomes include traditional regression models,\nregularization methods, tree-based methods, support vector\nmachines, neural networks, ensembles, data preprocessing,\nfiltering, and model tuning and selection.  Performance metrics\nare provided for model assessment and can be estimated with\nindependent test sets, split sampling, cross-validation, or\nbootstrap resampling.  Resample estimation can be executed in\nparallel for faster processing and nested in cases of model\ntuning and selection.  Modeling results can be summarized with\ndescriptive statistics; calibration curves; variable\nimportance; partial dependence plots; confusion matrices; and\nROC, lift, and other performance curves.",
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    "varimp",
    "weighted_kappa2",
    "XGBDARTModel",
    "XGBLinearModel",
    "XGBModel",
    "XGBTreeModel"
  ],
  "_datasets": [
    {
      "name": "ICHomes",
      "title": "Iowa City Home Sales Dataset",
      "object": "ICHomes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sale_amount",
        "sale_year",
        "sale_month",
        "built",
        "style",
        "construction",
        "base_size",
        "add_size",
        "garage1_size",
        "garage2_size",
        "lot_size",
        "bedrooms",
        "basement",
        "ac",
        "attic",
        "lon",
        "lat"
      ],
      "rows": 753,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "MachineShop-package",
      "title": "MachineShop: Machine Learning Models and Tools",
      "topics": [
        "MachineShop-package",
        "MachineShop"
      ]
    },
    {
      "page": "AdaBagModel",
      "title": "Bagging with Classification Trees",
      "topics": [
        "AdaBagModel"
      ]
    },
    {
      "page": "AdaBoostModel",
      "title": "Boosting with Classification Trees",
      "topics": [
        "AdaBoostModel"
      ]
    },
    {
      "page": "as.data.frame",
      "title": "Coerce to a Data Frame",
      "topics": [
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        "as.data.frame.ModelFrame",
        "as.data.frame.Resample",
        "as.data.frame.TabularArray"
      ]
    },
    {
      "page": "as.MLInput",
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      "topics": [
        "as.MLInput",
        "as.MLInput.MLModelFit",
        "as.MLInput.ModelSpecification"
      ]
    },
    {
      "page": "as.MLModel",
      "title": "Coerce to an MLModel",
      "topics": [
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        "as.MLModel.MLModelFit",
        "as.MLModel.ModelSpecification",
        "as.MLModel.model_spec"
      ]
    },
    {
      "page": "BARTMachineModel",
      "title": "Bayesian Additive Regression Trees Model",
      "topics": [
        "BARTMachineModel"
      ]
    },
    {
      "page": "BARTModel",
      "title": "Bayesian Additive Regression Trees Model",
      "topics": [
        "BARTModel"
      ]
    },
    {
      "page": "BlackBoostModel",
      "title": "Gradient Boosting with Regression Trees",
      "topics": [
        "BlackBoostModel"
      ]
    },
    {
      "page": "C50Model",
      "title": "C5.0 Decision Trees and Rule-Based Model",
      "topics": [
        "C50Model"
      ]
    },
    {
      "page": "calibration",
      "title": "Model Calibration",
      "topics": [
        "calibration"
      ]
    },
    {
      "page": "case_weights",
      "title": "Extract Case Weights",
      "topics": [
        "case_weights"
      ]
    },
    {
      "page": "CForestModel",
      "title": "Conditional Random Forest Model",
      "topics": [
        "CForestModel"
      ]
    },
    {
      "page": "combine-methods",
      "title": "Combine MachineShop Objects",
      "topics": [
        "+,SurvMatrix,SurvMatrix-method",
        "c",
        "c.Calibration",
        "c.ConfusionList",
        "c.ConfusionMatrix",
        "c.LiftCurve",
        "c.ListOf",
        "c.PerformanceCurve",
        "c.Resample",
        "combine"
      ]
    },
    {
      "page": "confusion",
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      "topics": [
        "confusion",
        "ConfusionMatrix"
      ]
    },
    {
      "page": "CoxModel",
      "title": "Proportional Hazards Regression Model",
      "topics": [
        "CoxModel",
        "CoxStepAICModel"
      ]
    },
    {
      "page": "dependence",
      "title": "Partial Dependence",
      "topics": [
        "dependence"
      ]
    },
    {
      "page": "diff-methods",
      "title": "Model Performance Differences",
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        "diff",
        "diff.MLModel",
        "diff.Performance",
        "diff.Resample"
      ]
    },
    {
      "page": "DiscreteVariate",
      "title": "Discrete Variate Constructors",
      "topics": [
        "BinomialVariate",
        "DiscreteVariate",
        "NegBinomialVariate",
        "PoissonVariate"
      ]
    },
    {
      "page": "EarthModel",
      "title": "Multivariate Adaptive Regression Splines Model",
      "topics": [
        "EarthModel"
      ]
    },
    {
      "page": "expand_model",
      "title": "Model Expansion Over Tuning Parameters",
      "topics": [
        "expand_model"
      ]
    },
    {
      "page": "expand_modelgrid-methods",
      "title": "Model Tuning Grid Expansion",
      "topics": [
        "expand_modelgrid",
        "expand_modelgrid.formula",
        "expand_modelgrid.matrix",
        "expand_modelgrid.MLModel",
        "expand_modelgrid.MLModelFunction",
        "expand_modelgrid.ModelFrame",
        "expand_modelgrid.ModelSpecification",
        "expand_modelgrid.recipe"
      ]
    },
    {
      "page": "expand_params",
      "title": "Model Parameters Expansion",
      "topics": [
        "expand_params"
      ]
    },
    {
      "page": "expand_steps",
      "title": "Recipe Step Parameters Expansion",
      "topics": [
        "expand_steps"
      ]
    },
    {
      "page": "extract-methods",
      "title": "Extract Elements of an Object",
      "topics": [
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        "[,DiscreteVariate,ANY,missing,missing-method",
        "[,ListOf,ANY,missing,missing-method",
        "[,ModelFrame,ANY,ANY,ANY-method",
        "[,ModelFrame,ANY,missing,ANY-method",
        "[,ModelFrame,missing,ANY,ANY-method",
        "[,ModelFrame,missing,missing,ANY-method",
        "[,RecipeGrid,ANY,ANY,ANY-method",
        "[,Resample,ANY,ANY,ANY-method",
        "[,Resample,ANY,missing,ANY-method",
        "[,Resample,missing,missing,ANY-method",
        "[,SurvMatrix,ANY,ANY,ANY-method",
        "[,SurvTimes,ANY,missing,missing-method",
        "[.BinomialVariate"
      ]
    },
    {
      "page": "FDAModel",
      "title": "Flexible and Penalized Discriminant Analysis Models",
      "topics": [
        "FDAModel",
        "PDAModel"
      ]
    },
    {
      "page": "fit-methods",
      "title": "Model Fitting",
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        "fit.formula",
        "fit.matrix",
        "fit.MLModel",
        "fit.MLModelFunction",
        "fit.ModelFrame",
        "fit.ModelSpecification",
        "fit.recipe"
      ]
    },
    {
      "page": "GAMBoostModel",
      "title": "Gradient Boosting with Additive Models",
      "topics": [
        "GAMBoostModel"
      ]
    },
    {
      "page": "GBMModel",
      "title": "Generalized Boosted Regression Model",
      "topics": [
        "GBMModel"
      ]
    },
    {
      "page": "GLMBoostModel",
      "title": "Gradient Boosting with Linear Models",
      "topics": [
        "GLMBoostModel"
      ]
    },
    {
      "page": "GLMModel",
      "title": "Generalized Linear Model",
      "topics": [
        "GLMModel",
        "GLMStepAICModel"
      ]
    },
    {
      "page": "GLMNetModel",
      "title": "GLM Lasso or Elasticnet Model",
      "topics": [
        "GLMNetModel"
      ]
    },
    {
      "page": "ICHomes",
      "title": "Iowa City Home Sales Dataset",
      "topics": [
        "ICHomes"
      ]
    },
    {
      "page": "inputs",
      "title": "Model Inputs",
      "topics": [
        "inputs"
      ]
    },
    {
      "page": "KNNModel",
      "title": "Weighted k-Nearest Neighbor Model",
      "topics": [
        "KNNModel"
      ]
    },
    {
      "page": "LARSModel",
      "title": "Least Angle Regression, Lasso and Infinitesimal Forward Stagewise Models",
      "topics": [
        "LARSModel"
      ]
    },
    {
      "page": "LDAModel",
      "title": "Linear Discriminant Analysis Model",
      "topics": [
        "LDAModel"
      ]
    },
    {
      "page": "lift",
      "title": "Model Lift Curves",
      "topics": [
        "lift"
      ]
    },
    {
      "page": "LMModel",
      "title": "Linear Models",
      "topics": [
        "LMModel"
      ]
    },
    {
      "page": "MDAModel",
      "title": "Mixture Discriminant Analysis Model",
      "topics": [
        "MDAModel"
      ]
    },
    {
      "page": "metricinfo",
      "title": "Display Performance Metric Information",
      "topics": [
        "metricinfo"
      ]
    },
    {
      "page": "metrics",
      "title": "Performance Metrics",
      "topics": [
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        "auc",
        "brier",
        "cindex",
        "cross_entropy",
        "fnr",
        "fpr",
        "f_score",
        "gini",
        "kappa2",
        "mae",
        "metrics",
        "mse",
        "msle",
        "npv",
        "ppr",
        "ppv",
        "precision",
        "pr_auc",
        "r2",
        "recall",
        "rmse",
        "rmsle",
        "roc_auc",
        "roc_index",
        "sensitivity",
        "specificity",
        "tnr",
        "tpr",
        "weighted_kappa2"
      ]
    },
    {
      "page": "MLControl",
      "title": "Resampling Controls",
      "topics": [
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        "BootOptimismControl",
        "controls",
        "CVControl",
        "CVOptimismControl",
        "MLControl",
        "OOBControl",
        "SplitControl",
        "TrainControl"
      ]
    },
    {
      "page": "MLMetric",
      "title": "MLMetric Class Constructor",
      "topics": [
        "MLMetric",
        "MLMetric<-"
      ]
    },
    {
      "page": "MLModel",
      "title": "MLModel and MLModelFunction Class Constructors",
      "topics": [
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        "MLModelFunction"
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    },
    {
      "page": "ModelFrame-methods",
      "title": "ModelFrame Class",
      "topics": [
        "ModelFrame",
        "ModelFrame.formula",
        "ModelFrame.matrix"
      ]
    },
    {
      "page": "modelinfo",
      "title": "Display Model Information",
      "topics": [
        "modelinfo"
      ]
    },
    {
      "page": "models",
      "title": "Models",
      "topics": [
        "models"
      ]
    },
    {
      "page": "ModelSpecification-methods",
      "title": "Model Specification",
      "topics": [
        "ModelSpecification",
        "ModelSpecification.default",
        "ModelSpecification.formula",
        "ModelSpecification.matrix",
        "ModelSpecification.ModelFrame",
        "ModelSpecification.recipe"
      ]
    },
    {
      "page": "NaiveBayesModel",
      "title": "Naive Bayes Classifier Model",
      "topics": [
        "NaiveBayesModel"
      ]
    },
    {
      "page": "NNetModel",
      "title": "Neural Network Model",
      "topics": [
        "NNetModel"
      ]
    },
    {
      "page": "ParameterGrid",
      "title": "Tuning Parameters Grid",
      "topics": [
        "ParameterGrid",
        "ParameterGrid.list",
        "ParameterGrid.param",
        "ParameterGrid.parameters"
      ]
    },
    {
      "page": "ParsnipModel",
      "title": "Parsnip Model",
      "topics": [
        "ParsnipModel"
      ]
    },
    {
      "page": "performance",
      "title": "Model Performance Metrics",
      "topics": [
        "performance",
        "performance.BinomialVariate",
        "performance.ConfusionList",
        "performance.ConfusionMatrix",
        "performance.factor",
        "performance.matrix",
        "performance.MLModel",
        "performance.numeric",
        "performance.Resample",
        "performance.Surv",
        "performance.TrainingStep"
      ]
    },
    {
      "page": "performance_curve",
      "title": "Model Performance Curves",
      "topics": [
        "curves",
        "performance_curve",
        "performance_curve.default",
        "performance_curve.Resample"
      ]
    },
    {
      "page": "plot-methods",
      "title": "Model Performance Plots",
      "topics": [
        "plot",
        "plot.Calibration",
        "plot.ConfusionList",
        "plot.ConfusionMatrix",
        "plot.LiftCurve",
        "plot.MLModel",
        "plot.PartialDependence",
        "plot.Performance",
        "plot.PerformanceCurve",
        "plot.Resample",
        "plot.TrainingStep",
        "plot.VariableImportance"
      ]
    },
    {
      "page": "PLSModel",
      "title": "Partial Least Squares Model",
      "topics": [
        "PLSModel"
      ]
    },
    {
      "page": "POLRModel",
      "title": "Ordered Logistic or Probit Regression Model",
      "topics": [
        "POLRModel"
      ]
    },
    {
      "page": "predict",
      "title": "Model Prediction",
      "topics": [
        "predict",
        "predict,MLModelFit-method",
        "predict.MLModelFit"
      ]
    },
    {
      "page": "print-methods",
      "title": "Print MachineShop Objects",
      "topics": [
        "print",
        "print.BinomialVariate",
        "print.Calibration",
        "print.DiscreteVariate",
        "print.ListOf",
        "print.MLControl",
        "print.MLMetric",
        "print.MLModel",
        "print.MLModelFunction",
        "print.ModelFrame",
        "print.ModelRecipe",
        "print.ModelSpecification",
        "print.Performance",
        "print.PerformanceCurve",
        "print.RecipeGrid",
        "print.Resample",
        "print.SurvMatrix",
        "print.SurvTimes",
        "print.TrainingStep",
        "print.VariableImportance"
      ]
    },
    {
      "page": "QDAModel",
      "title": "Quadratic Discriminant Analysis Model",
      "topics": [
        "QDAModel"
      ]
    },
    {
      "page": "quote",
      "title": "Quote Operator",
      "topics": [
        ".",
        "quote"
      ]
    },
    {
      "page": "RandomForestModel",
      "title": "Random Forest Model",
      "topics": [
        "RandomForestModel"
      ]
    },
    {
      "page": "RangerModel",
      "title": "Fast Random Forest Model",
      "topics": [
        "RangerModel"
      ]
    },
    {
      "page": "recipe_roles",
      "title": "Set Recipe Roles",
      "topics": [
        "recipe_roles",
        "role_binom",
        "role_case",
        "role_pred",
        "role_surv"
      ]
    },
    {
      "page": "resample-methods",
      "title": "Resample Estimation of Model Performance",
      "topics": [
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        "resample.formula",
        "resample.matrix",
        "resample.MLModel",
        "resample.MLModelFunction",
        "resample.ModelFrame",
        "resample.ModelSpecification",
        "resample.recipe"
      ]
    },
    {
      "page": "response-methods",
      "title": "Extract Response Variable",
      "topics": [
        "response",
        "response.MLModelFit",
        "response.ModelFrame",
        "response.ModelSpecification",
        "response.recipe"
      ]
    },
    {
      "page": "rfe-methods",
      "title": "Recursive Feature Elimination",
      "topics": [
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        "rfe.formula",
        "rfe.matrix",
        "rfe.MLModel",
        "rfe.MLModelFunction",
        "rfe.ModelFrame",
        "rfe.ModelSpecification",
        "rfe.recipe"
      ]
    },
    {
      "page": "RFSRCModel",
      "title": "Fast Random Forest (SRC) Model",
      "topics": [
        "RFSRCFastModel",
        "RFSRCModel"
      ]
    },
    {
      "page": "RPartModel",
      "title": "Recursive Partitioning and Regression Tree Models",
      "topics": [
        "RPartModel"
      ]
    },
    {
      "page": "SelectedInput",
      "title": "Selected Model Inputs",
      "topics": [
        "SelectedInput",
        "SelectedInput.formula",
        "SelectedInput.list",
        "SelectedInput.matrix",
        "SelectedInput.ModelFrame",
        "SelectedInput.ModelSpecification",
        "SelectedInput.recipe",
        "SelectedModelFrame",
        "SelectedModelRecipe",
        "SelectedModelSpecification"
      ]
    },
    {
      "page": "SelectedModel",
      "title": "Selected Model",
      "topics": [
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        "SelectedModel.default",
        "SelectedModel.list",
        "SelectedModel.ModelSpecification"
      ]
    },
    {
      "page": "set_monitor-methods",
      "title": "Training Parameters Monitoring Control",
      "topics": [
        "set_monitor",
        "set_monitor.MLControl",
        "set_monitor.MLOptimization",
        "set_monitor.ModelSpecification"
      ]
    },
    {
      "page": "set_optim-methods",
      "title": "Tuning Parameter Optimization",
      "topics": [
        "set_optim",
        "set_optim_bayes",
        "set_optim_bayes.ModelSpecification",
        "set_optim_bfgs",
        "set_optim_bfgs.ModelSpecification",
        "set_optim_grid",
        "set_optim_grid.ModelSpecification",
        "set_optim_grid.TrainingParams",
        "set_optim_grid.TunedInput",
        "set_optim_grid.TunedModel",
        "set_optim_method",
        "set_optim_method.ModelSpecification",
        "set_optim_pso",
        "set_optim_pso.ModelSpecification",
        "set_optim_sann",
        "set_optim_sann.ModelSpecification"
      ]
    },
    {
      "page": "set_predict",
      "title": "Resampling Prediction Control",
      "topics": [
        "set_predict"
      ]
    },
    {
      "page": "set_strata",
      "title": "Resampling Stratification Control",
      "topics": [
        "set_strata"
      ]
    },
    {
      "page": "settings",
      "title": "MachineShop Settings",
      "topics": [
        "settings"
      ]
    },
    {
      "page": "StackedModel",
      "title": "Stacked Regression Model",
      "topics": [
        "StackedModel"
      ]
    },
    {
      "page": "step_kmeans",
      "title": "K-Means Clustering Variable Reduction",
      "topics": [
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        "tidy.step_kmeans",
        "tunable.step_kmeans"
      ]
    },
    {
      "page": "step_kmedoids",
      "title": "K-Medoids Clustering Variable Selection",
      "topics": [
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        "tunable.step_kmedoids"
      ]
    },
    {
      "page": "step_lincomp",
      "title": "Linear Components Variable Reduction",
      "topics": [
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        "tidy.step_lincomp",
        "tunable.step_lincomp"
      ]
    },
    {
      "page": "step_sbf",
      "title": "Variable Selection by Filtering",
      "topics": [
        "step_sbf",
        "tidy.step_sbf"
      ]
    },
    {
      "page": "step_spca",
      "title": "Sparse Principal Components Analysis Variable Reduction",
      "topics": [
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        "tunable.step_spca"
      ]
    },
    {
      "page": "summary-methods",
      "title": "Model Performance Summaries",
      "topics": [
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        "summary.ConfusionList",
        "summary.ConfusionMatrix",
        "summary.MLModel",
        "summary.MLModelFit",
        "summary.Performance",
        "summary.PerformanceCurve",
        "summary.Resample",
        "summary.TrainingStep"
      ]
    },
    {
      "page": "SuperModel",
      "title": "Super Learner Model",
      "topics": [
        "SuperModel"
      ]
    },
    {
      "page": "SurvMatrix",
      "title": "SurvMatrix Class Constructors",
      "topics": [
        "SurvEvents",
        "SurvMatrix",
        "SurvProbs"
      ]
    },
    {
      "page": "SurvRegModel",
      "title": "Parametric Survival Model",
      "topics": [
        "SurvRegModel",
        "SurvRegStepAICModel"
      ]
    },
    {
      "page": "SVMModel",
      "title": "Support Vector Machine Models",
      "topics": [
        "SVMANOVAModel",
        "SVMBesselModel",
        "SVMLaplaceModel",
        "SVMLinearModel",
        "SVMModel",
        "SVMPolyModel",
        "SVMRadialModel",
        "SVMSplineModel",
        "SVMTanhModel"
      ]
    },
    {
      "page": "t.test",
      "title": "Paired t-Tests for Model Comparisons",
      "topics": [
        "t.test",
        "t.test.PerformanceDiff"
      ]
    },
    {
      "page": "TreeModel",
      "title": "Classification and Regression Tree Models",
      "topics": [
        "TreeModel"
      ]
    },
    {
      "page": "TunedInput",
      "title": "Tuned Model Inputs",
      "topics": [
        "TunedInput",
        "TunedInput.recipe",
        "TunedModelRecipe"
      ]
    },
    {
      "page": "TunedModel",
      "title": "Tuned Model",
      "topics": [
        "TunedModel"
      ]
    },
    {
      "page": "TuningGrid",
      "title": "Tuning Grid Control",
      "topics": [
        "TuningGrid"
      ]
    },
    {
      "page": "unMLModelFit",
      "title": "Revert an MLModelFit Object",
      "topics": [
        "unMLModelFit"
      ]
    },
    {
      "page": "varimp",
      "title": "Variable Importance",
      "topics": [
        "varimp"
      ]
    },
    {
      "page": "XGBModel",
      "title": "Extreme Gradient Boosting Models",
      "topics": [
        "XGBDARTModel",
        "XGBLinearModel",
        "XGBModel",
        "XGBTreeModel"
      ]
    }
  ],
  "_readme": "https://github.com/brian-j-smith/machineshop/raw/HEAD/README.md",
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